Installation¶
Using git:
git clone https://github.com/SitaoZ/TSARP.git
Or pip:
pip install TSARP
gffutils is tested with Python 3.6, 3.7, 3.8, 3.9.
Optional requirements¶
BioPython (for creating SeqFeatures and SeqRecords)
Pandas
NumPy
scikit-learn
PyTorch
Install them all with conda:
conda install --channel conda-forge --channel bioconda numpy pandas biopython scikit-learn torch
Or pip:
pip install numpy pandas biopython scikit-learn torch