Installation

Using git:

git clone https://github.com/SitaoZ/TSARP.git

Or pip:

pip install TSARP

gffutils is tested with Python 3.6, 3.7, 3.8, 3.9.

Optional requirements

  • BioPython (for creating SeqFeatures and SeqRecords)

  • Pandas

  • NumPy

  • scikit-learn

  • PyTorch

Install them all with conda:

conda install --channel conda-forge --channel bioconda numpy pandas biopython scikit-learn torch

Or pip:

pip install numpy pandas biopython scikit-learn torch