Installation
============

Using `git <https://git-scm.com/>`_::

    git clone https://github.com/SitaoZ/TSARP.git

Or `pip`::

    pip install TSARP


`gffutils` is `tested <https://github.com/daler/gffutils/actions>`_ with Python
3.6, 3.7, 3.8, 3.9.

Optional requirements
---------------------

* BioPython (for creating SeqFeatures and SeqRecords)
* Pandas
* NumPy
* scikit-learn 
* PyTorch

Install them all with `conda`::

    conda install --channel conda-forge --channel bioconda numpy pandas biopython scikit-learn torch
Or `pip`::
    
    pip install numpy pandas biopython scikit-learn torch