uORFlight

Year	Literature
2007	Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes.
2008	Conserved upstream open reading frames in higher plants.
2009	Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner.
2009	Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis.
2012	BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences and its application to the Arabidopsis thaliana genome.
2012	Known and novel post-transcriptional regulatory sequences are conserved across plant families.
2012	Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.
2012	Conserved peptide upstream open reading frames are associated with regulatory genes in angiosperms.
2013	The global translation profile in a ribosomal protein mutant resembles that of an eIF3 mutant.
2013	Translational landscape of photomorphogenic Arabidopsis.
2014	Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis.
2015	Identification of novel Arabidopsis thaliana upstream open reading frames that control expression of the main coding sequences in a peptide sequence-dependent manner.
2015	Ribosome profiling reveals dynamic translational landscape in maize seedlings under drought stress.
2016	Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis.
2016	Global analysis of truncated RNA ends reveals new insights into ribosome stalling in plants.
2016	Genome-wide mapping of uncapped and cleaved transcripts reveals a role for the nuclear mRNA cap-binding complex in cotranslational RNA decay in Arabidopsis.
2017	Identification of Arabidopsis thaliana upstream open reading frames encoding peptide sequences that cause ribosomal arrest.
2017	Global translational reprogramming is a fundamental layer of immune regulation in plants.
2017	Analysis of ribosome-associated mRNAs in rice reveals the importance of transcript size and GC content in translation.
2017	Translatome analysis of an NB-LRR immune response identifies important contributors to plant immunity in Arabidopsis.
2017	Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation.
2018	Transcripts from downstream alternative transcription start sites evade uORF-mediated inhibition of gene expression in Arabidopsis.
2018	Novel pipeline identifies new upstream ORFs and non-AUG initiating main ORFs with conserved amino acid sequences in the 5' leader of mRNAs in Arabidopsis thaliana.
2019	The tomato translational landscape revealed by transcriptome assembly and ribosome profiling.
2019	Translational regulation of metabolic dynamics during effector-triggered immunity.
2019	Translational landscape of protein-coding and non-protein-coding RNAs upon light exposure in Arabidopsis.
2020	Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA.
2021	Global analysis of boron-induced ribosome stalling reveals its effects on translation termination and unique regulation by AUG-stops in Arabidopsis shoots.
2021	Chromatin accessibility and translational landscapes of tea plants under chilling stress.
2021	Global analysis of boron-induced ribosome stalling reveals its effects on translation termination and unique regulation by AUG-stops in Arabidopsis shoots.
2022	Genome-wide identification of Arabidopsis non-AUG-initiated upstream ORFs with evolutionarily conserved regulatory sequences that control protein expression levels.
2022	Ribo-uORF: a comprehensive data resource of upstream open reading frames (uORFs) based on ribosome profiling.
2022	The new uORFdb: integrating literature, sequence, and variation data in a central hub for uORF research.

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